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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_6039636_6040583_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6039636 - 6040583
Intron Length:
948

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATCACC
5'SS Class:
major
3'SS Sequence:
TTTTTCCCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAC
U12 Branch Point Sequence:
TACCCCCTAACT
Flanking Amino Acid:
NGVQPLNLSQNQQTTVLASQ
Intron Amino Acid Position:
1075

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.7
1
71.7
38.4
Major BPS
74.2
0.6
1
67
39.4
Major PPT
90.6
0.91
0.6
85.8
21.3
Minor 5ss
40.7
-1
2.8
53.4
43.4
Minor BPS
64.8
0.54
1.7
79.88
41.4

Associated Gene:

Gene:
HIPK1
Ensembl Gene ID:
ENSAPLG00000011009
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011503
6013602 - 6043358
29757
ENSAPLT00000034240
6010171 - 6043358
33188
ENSAPLT00000030057
6010171 - 6043358
33188
ENSAPLT00000029783
6019746 - 6043358
23613
ENSAPLT00000025333
6010171 - 6043358
33188