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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_6046289_6046728_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6046289 - 6046728
Intron Length:
440

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTGAGAGCC
5'SS Class:
major
3'SS Sequence:
TCAACTCTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTCAC
U12 Branch Point Sequence:
AGCTGCTCAACT
Flanking Amino Acid:
RKNEKYTKLTDCSDTIASVR
Intron Amino Acid Position:
122

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.6
0.63
1
63.4
35.3
Major BPS
77.7
0.69
1
81
30.2
Major PPT
76
0.59
0.9
69.4
36.4
Minor 5ss
26.7
-2.7
3.2
34.9
41.1
Minor BPS
53.5
0.19
2
71.49
45.1

Associated Gene:

Gene:
OLFML3
Ensembl Gene ID:
ENSAPLG00000010949
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011397
6045320 - 6047513
2194