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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_605417_607497_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
605417 - 607497
Intron Length:
2081

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGAGGAC
5'SS Class:
major
3'SS Sequence:
TTACTCCCTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTGAT
U12 Branch Point Sequence:
TGTGGTTTTACT
Flanking Amino Acid:
DPNHPLQPSERVLPATEDCF
Intron Amino Acid Position:
337

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.2
0.48
1.1
60.7
38.5
Major BPS
79.8
0.74
0.9
69.4
37.7
Major PPT
77
0.61
0.8
74.8
30.2
Minor 5ss
27.5
-2.6
3.8
39.6
46.7
Minor BPS
48.8
-0
2.2
72.27
44.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014679
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042114
588119 - 607528
19410