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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_6108597_6108678_R

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6108597 - 6108678
Intron Length:
82

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCGTT
5'SS Class:
strong_major
3'SS Sequence:
CTTTTATTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TCTTCTTTTATT
Flanking Amino Acid:
YAETQEINLKADSEVAQAGK
Intron Amino Acid Position:
890

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.6
0.98
0.8
85.2
32.2
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
89.5
0.89
0.7
84.1
29.7
Minor 5ss
42.3
-0.9
3.5
64.1
47.4
Minor BPS
69.5
0.7
1.6
83.31
38.3

Associated Gene:

Gene:
TRIM33
Ensembl Gene ID:
ENSAPLG00000010459
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010950
6108384 - 6129388
21005