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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_6108730_6110355_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6108730 - 6110355
Intron Length:
1626

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTACGTTAA
5'SS Class:
major
3'SS Sequence:
GTATCCTTTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATAAT
U12 Branch Point Sequence:
TTTTTTTTGACT
Flanking Amino Acid:
IFKNCERFNEMMKVVQVYAE
Intron Amino Acid Position:
873

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.2
0.64
1
74.1
32.5
Major BPS
87.8
0.94
0.9
86.6
28.1
Major PPT
76.5
0.6
0.9
74
36.4
Minor 5ss
40.2
-1.1
3
48.5
42.1
Minor BPS
82
1.09
0.9
94.3
25.7

Associated Gene:

Gene:
TRIM33
Ensembl Gene ID:
ENSAPLG00000010459
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010950
6108384 - 6129388
21005