Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_6109384_6110355_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6109384 - 6110355

Intron Length:

972

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAA|GTACGTTAA

5'SS Class:

major

3'SS Sequence:

GTCTCTGTATTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTTTGAC

U12 Branch Point Sequence:

ACTCCCTTATGT

Flanking Amino Acid:

IFKNCERFNEVEVIEHCGRS

Intron Amino Acid Position:

873

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

77.2

0.64

74.1

32.5

Major BPS

74.1

0.6

66.7

39.9

Major PPT

67.1

0.39

66.4

39.5

Minor 5ss

40.2

-1.1

48.5

42.1

Minor BPS

0.2

1.9

71.66

45.1

Associated Gene:

Gene:

TRIM33

Ensembl Gene ID:

ENSAPLG00000010459

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000038425

6109228 - 6129388

20161