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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_6111153_6112109_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6111153 - 6112109
Intron Length:
957

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTATGTAAG
5'SS Class:
major
3'SS Sequence:
ATTTCTTTGTAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
TTAACATGAAGC
Flanking Amino Acid:
AQGLSPVDQRKCERLLLYLY
Intron Amino Acid Position:
797

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.6
0.68
1
70.6
41.3
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
69.4
0.44
1.2
75.9
37.7
Minor 5ss
40.7
-1
2.5
42.2
44.7
Minor BPS
47.5
-0.2
2
62.67
41.9

Associated Gene:

Gene:
TRIM33
Ensembl Gene ID:
ENSAPLG00000010459
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045400
6108384 - 6129388
21005
ENSAPLT00000038425
6109228 - 6129388
20161
ENSAPLT00000010950
6108384 - 6129388
21005