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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_6112234_6112752_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6112234 - 6112752
Intron Length:
519

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACCAGAA
5'SS Class:
major
3'SS Sequence:
TTTTTCTGTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCTT
U12 Branch Point Sequence:
TTTTCTTTTTTT
Flanking Amino Acid:
CHVPTLLSFPSGEWICTFCR
Intron Amino Acid Position:
755

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.1
0.43
1.2
62.4
38.4
Major BPS
39.5
-0.6
4.3
85.7
34.9
Major PPT
84.9
0.78
0.8
85.4
29.4
Minor 5ss
34.2
-1.8
3.6
47
48.4
Minor BPS
46.2
-0.2
3.6
83.31
38.3

Associated Gene:

Gene:
TRIM33
Ensembl Gene ID:
ENSAPLG00000010459
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045400
6108384 - 6129388
21005
ENSAPLT00000038425
6109228 - 6129388
20161
ENSAPLT00000010950
6108384 - 6129388
21005