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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_6113100_6114171_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6113100 - 6114171
Intron Length:
1072

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAAGTTA
5'SS Class:
major
3'SS Sequence:
ACTTTCATTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
GCTACTTTCATT
Flanking Amino Acid:
TEDGRRSACMLSSPESSLTP
Intron Amino Acid Position:
640

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.6
0.58
1
70.8
35.4
Major BPS
100
1.24
0.5
100
0
Major PPT
81.6
0.71
0.8
78.4
34.1
Minor 5ss
39.8
-1.1
3.4
52
47
Minor BPS
52.9
0.17
1.8
68.78
42.8

Associated Gene:

Gene:
TRIM33
Ensembl Gene ID:
ENSAPLG00000010459
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038425
6109228 - 6129388
20161
ENSAPLT00000010950
6108384 - 6129388
21005
ENSAPLT00000045400
6108384 - 6129388
21005