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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_6115855_6117661_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6115855 - 6117661
Intron Length:
1807

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGTGGA
5'SS Class:
major
3'SS Sequence:
TTTTGTTTTCTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATTAG
U12 Branch Point Sequence:
GCTTCTCTGACT
Flanking Amino Acid:
PSLPDIPPIQLEDAGSSSLD
Intron Amino Acid Position:
521

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1.3
72.4
39.5
Major BPS
53
0.08
1.6
52
43.5
Major PPT
87.7
0.85
0.7
81.2
36.5
Minor 5ss
27.5
-2.6
2.9
32.7
42
Minor BPS
60.7
0.42
1.7
76.55
40.2

Associated Gene:

Gene:
TRIM33
Ensembl Gene ID:
ENSAPLG00000010459
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010950
6108384 - 6129388
21005
ENSAPLT00000045400
6108384 - 6129388
21005
ENSAPLT00000038425
6109228 - 6129388
20161