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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_6117863_6118731_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6117863 - 6118731
Intron Length:
869

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTATATCCT
5'SS Class:
major
3'SS Sequence:
TCTTTTCCTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTAAT
U12 Branch Point Sequence:
CTTTTCCTACAG
Flanking Amino Acid:
SMMQPHLQRQHSNPGHAGPF
Intron Amino Acid Position:
454

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.6
0.41
1.1
64.1
40
Major BPS
82.2
0.8
0.9
81.6
27
Major PPT
89.4
0.89
0.6
84.3
23.9
Minor 5ss
44
-0.7
2.9
59.5
39.2
Minor BPS
46.1
-0.4
2.1
56.57
44.8

Associated Gene:

Gene:
TRIM33
Ensembl Gene ID:
ENSAPLG00000010459
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045400
6108384 - 6129388
21005
ENSAPLT00000038425
6109228 - 6129388
20161
ENSAPLT00000010950
6108384 - 6129388
21005