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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_6118897_6119124_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6118897 - 6119124
Intron Length:
228

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CAG|GCAAGTTTC
5'SS Class:
strong_major
3'SS Sequence:
AAAACCCTTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTTAAAAAACA
Flanking Amino Acid:
QTGPQILQQQPPRLISMQTM
Intron Amino Acid Position:
399

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
98.5
1.14
0.7
89.2
28.7
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
64.7
0.33
1
55.6
40
Minor 5ss
34.4
-1.8
4
52
45.2
Minor BPS
46.7
-0.2
2.3
70.89
40.6

Associated Gene:

Gene:
TRIM33
Ensembl Gene ID:
ENSAPLG00000010459
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045400
6108384 - 6129388
21005
ENSAPLT00000038425
6109228 - 6129388
20161
ENSAPLT00000010950
6108384 - 6129388
21005