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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_6119370_6121418_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6119370 - 6121418
Intron Length:
2049

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTATTCCTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
TTTTGTTTTATT
Flanking Amino Acid:
TFWAKNVVNLGNLVIENKPT
Intron Amino Acid Position:
317

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.6
0.91
0.8
82.1
24.6
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
82.2
0.72
0.7
81.8
29.8
Minor 5ss
27.3
-2.6
2.7
30.6
42.8
Minor BPS
59.2
0.37
2
83.31
38.3

Associated Gene:

Gene:
TRIM33
Ensembl Gene ID:
ENSAPLG00000010459
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045400
6108384 - 6129388
21005
ENSAPLT00000038425
6109228 - 6129388
20161
ENSAPLT00000010950
6108384 - 6129388
21005