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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_6121537_6122035_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6121537 - 6122035
Intron Length:
499

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGGAAA
5'SS Class:
strong_major
3'SS Sequence:
TGCTTTCCATTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTAAT
U12 Branch Point Sequence:
TTGTAATCAACA
Flanking Amino Acid:
STALLYSKRLITFQLRHILK
Intron Amino Acid Position:
278

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
76.6
33.6
Major BPS
84.4
0.85
1.1
84
34.5
Major PPT
71.4
0.48
0.9
71.3
34.5
Minor 5ss
31.7
-2.1
3.1
36.4
42
Minor BPS
52
0.06
2
70.31
41.3

Associated Gene:

Gene:
TRIM33
Ensembl Gene ID:
ENSAPLG00000010459
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045400
6108384 - 6129388
21005
ENSAPLT00000038425
6109228 - 6129388
20161
ENSAPLT00000010950
6108384 - 6129388
21005