About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_612211_613533_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
612211 - 613533
Intron Length:
1323

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGTGAT
5'SS Class:
strong_major
3'SS Sequence:
TCTTCCCCTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAGCAAT
U12 Branch Point Sequence:
AATCCTTGGAGC
Flanking Amino Acid:
GFIPPSYRGVRYVDGGFTGL
Intron Amino Acid Position:
147

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
0.8
79.2
28.9
Major BPS
54
0.1
1.4
62.7
41.6
Major PPT
84.5
0.78
0.7
81.7
23.3
Minor 5ss
29.1
-2.4
3.2
36.8
41.9
Minor BPS
46.3
-0.3
1.7
55
36.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014675
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015287
611947 - 618372
6426