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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_6122183_6123373_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6122183 - 6123373
Intron Length:
1191

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACAGTCA
5'SS Class:
major
3'SS Sequence:
TATCTCTTCATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
AAGTTTTTATCT
Flanking Amino Acid:
KGKSLLQHLENVTKERQMKL
Intron Amino Acid Position:
229

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.9
0.49
1.1
62.8
38.2
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
77.5
0.62
0.8
72.8
31.7
Minor 5ss
35.3
-1.7
3.5
47.9
47.7
Minor BPS
58.2
0.34
1.6
70.7
40.6

Associated Gene:

Gene:
TRIM33
Ensembl Gene ID:
ENSAPLG00000010459
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038425
6109228 - 6129388
20161
ENSAPLT00000010950
6108384 - 6129388
21005
ENSAPLT00000045400
6108384 - 6129388
21005