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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_6123862_6126681_R

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
6123862 - 6126681
Intron Length:
2820

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTCACA
5'SS Class:
major
3'SS Sequence:
TGCATGTGAAAAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTGCAT
U12 Branch Point Sequence:
TCCTTGGTAACT
Flanking Amino Acid:
DCQLLEHKEHRYQFLEEAFQ
Intron Amino Acid Position:
151

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.3
0.48
1.1
64.6
41.3
Major BPS
75
0.62
1.4
85.7
34.9
Major PPT
49
-0
1.2
48.3
43
Minor 5ss
38.7
-1.3
3
50.4
45.5
Minor BPS
46.7
-0.1
2.6
70.32
47.1

Associated Gene:

Gene:
TRIM33
Ensembl Gene ID:
ENSAPLG00000010459
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045400
6108384 - 6129388
21005
ENSAPLT00000038425
6109228 - 6129388
20161
ENSAPLT00000010950
6108384 - 6129388
21005