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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_6129112_6129217_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6129112 - 6129217
Intron Length:
106

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATAACAC
5'SS Class:
major
3'SS Sequence:
ATTCCCCTTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
CTGACTTTAATT
Flanking Amino Acid:
PSSSDEKSEQVCTSCEDNAS
Intron Amino Acid Position:
58

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.2
0.52
1
61.1
37.8
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
76.6
0.6
0.8
70.6
29.6
Minor 5ss
37.7
-1.4
3.1
50.3
46.3
Minor BPS
68.2
0.65
1.3
75.99
41.5

Associated Gene:

Gene:
TRIM33
Ensembl Gene ID:
ENSAPLG00000010459
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045400
6108384 - 6129388
21005
ENSAPLT00000038425
6109228 - 6129388
20161
ENSAPLT00000010950
6108384 - 6129388
21005