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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_613600_614658_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
613600 - 614658
Intron Length:
1059

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACGGGA
5'SS Class:
major
3'SS Sequence:
TCTCCTCCTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTCAT
U12 Branch Point Sequence:
ACTTCTGCAATT
Flanking Amino Acid:
EFSSKEELIQALLCSCFLPI
Intron Amino Acid Position:
125

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.9
0.59
1.2
64
42.4
Major BPS
83.4
0.83
0.8
83.7
25.7
Major PPT
82
0.72
0.7
73.4
31.6
Minor 5ss
34.1
-1.8
3.6
47.1
48.3
Minor BPS
48.6
-0
2.2
69.9
42

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014675
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015287
611947 - 618372
6426