Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_6146097_6146826_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6146097 - 6146826

Intron Length:

730

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAGGTTTA

5'SS Class:

strong_major

3'SS Sequence:

GTCCTCCTCACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGCTGAA

U12 Branch Point Sequence:

CTCTGCTGAACT

Flanking Amino Acid:

ILSHEQSCIQGDMPLNSLVS

Intron Amino Acid Position:

814

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.3

0.9

84.1

30.2

Major BPS

0.42

1.1

57.3

41.7

Major PPT

74.8

0.56

0.8

68.2

32.1

Minor 5ss

42.4

-0.8

3.1

57.6

47.1

Minor BPS

58.5

0.35

76.42

46.1

Associated Gene:

Gene:

DENND2C

Ensembl Gene ID:

ENSAPLG00000010131

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000043353

6144511 - 6164344

19834

ENSAPLT00000010576

6144511 - 6164572

20062

ENSAPLT00000044797

6144511 - 6163760

19250