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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_6146933_6147884_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6146933 - 6147884
Intron Length:
952

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
CTTTTCTGCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
AAAGCTTTAATG
Flanking Amino Acid:
DLCTDRFLQEVSDEDEILPH
Intron Amino Acid Position:
779

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92
0.99
0.7
82.8
23.2
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
76.7
0.6
0.8
77
31.7
Minor 5ss
26.6
-2.7
3
30.8
43.1
Minor BPS
57.8
0.11
1.5
55.52
40.2

Associated Gene:

Gene:
DENND2C
Ensembl Gene ID:
ENSAPLG00000010131
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043353
6144511 - 6164344
19834
ENSAPLT00000010576
6144511 - 6164572
20062
ENSAPLT00000044797
6144511 - 6163760
19250