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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_6149447_6150127_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6149447 - 6150127
Intron Length:
681

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGACGG
5'SS Class:
strong_major
3'SS Sequence:
TATTTTCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTACAA
U12 Branch Point Sequence:
TCTGATTTATTT
Flanking Amino Acid:
RLGCFNLFSKILDEVEKRRE
Intron Amino Acid Position:
609

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.77
0.9
62.5
43.9
Major BPS
73.5
0.59
1
81.3
29.9
Major PPT
90
0.9
0.7
85.2
29.1
Minor 5ss
25.9
-2.8
2.9
30.2
42.8
Minor BPS
48.9
0
1.8
67.9
43.9

Associated Gene:

Gene:
DENND2C
Ensembl Gene ID:
ENSAPLG00000010131
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043353
6144511 - 6164344
19834
ENSAPLT00000010576
6144511 - 6164572
20062
ENSAPLT00000044797
6144511 - 6163760
19250