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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_6150206_6150552_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6150206 - 6150552
Intron Length:
347

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGCATT
5'SS Class:
strong_major
3'SS Sequence:
TATTGCCTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
ATGTTATCAACA
Flanking Amino Acid:
RWFGYCKKLLPEGKGKRLPE
Intron Amino Acid Position:
583

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.9
83.5
35
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
81.8
0.72
0.9
78
36.1
Minor 5ss
45.5
-0.5
2.9
63.6
42
Minor BPS
53.6
0.11
1.8
67.04
39.1

Associated Gene:

Gene:
DENND2C
Ensembl Gene ID:
ENSAPLG00000010131
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043353
6144511 - 6164344
19834
ENSAPLT00000010576
6144511 - 6164572
20062
ENSAPLT00000044797
6144511 - 6163760
19250