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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_6150623_6151060_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6150623 - 6151060
Intron Length:
438

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGACT
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTTCCCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAC
U12 Branch Point Sequence:
GTCAATTTAACT
Flanking Amino Acid:
KDWFPASQLTSETFSFVLTG
Intron Amino Acid Position:
559

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
0.9
78.5
35.4
Major BPS
80.9
0.77
0.8
81.7
25.4
Major PPT
84.2
0.77
0.8
77.2
37.1
Minor 5ss
34.3
-1.8
3.3
49.5
46.5
Minor BPS
61.3
0.43
1.6
74.46
42.1

Associated Gene:

Gene:
DENND2C
Ensembl Gene ID:
ENSAPLG00000010131
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043353
6144511 - 6164344
19834
ENSAPLT00000010576
6144511 - 6164572
20062
ENSAPLT00000044797
6144511 - 6163760
19250