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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_6158479_6158840_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6158479 - 6158840
Intron Length:
362

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGGGAT
5'SS Class:
strong_major
3'SS Sequence:
TATTATTTTCTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATTAT
U12 Branch Point Sequence:
CCATGCTTAACC
Flanking Amino Acid:
PSQSTRRAPKLPPKPSFLSR
Intron Amino Acid Position:
358

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.1
0.73
1
73
38.2
Major BPS
75.9
0.64
1
66.1
40.5
Major PPT
81.5
0.71
0.8
74
40.9
Minor 5ss
29.5
-2.3
3.8
45.4
49.7
Minor BPS
61.9
0.35
1.8
66.7
44.9

Associated Gene:

Gene:
DENND2C
Ensembl Gene ID:
ENSAPLG00000010131
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043353
6144511 - 6164344
19834
ENSAPLT00000010576
6144511 - 6164572
20062
ENSAPLT00000044797
6144511 - 6163760
19250