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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_6159662_6160200_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6159662 - 6160200
Intron Length:
539

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACATTGA
5'SS Class:
major
3'SS Sequence:
GGTTTTCCTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAGAA
U12 Branch Point Sequence:
TTGTCTTTAGAA
Flanking Amino Acid:
ASRSIRGRSQRKSFEFEDIH
Intron Amino Acid Position:
270

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.4
0.62
1
68.5
39.2
Major BPS
70
0.5
1
67
39.8
Major PPT
75.3
0.57
0.9
66.9
40.5
Minor 5ss
37.8
-1.4
3.1
50
46.2
Minor BPS
61.9
0.37
1.7
72.44
39.7

Associated Gene:

Gene:
DENND2C
Ensembl Gene ID:
ENSAPLG00000010131
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043353
6144511 - 6164344
19834
ENSAPLT00000010576
6144511 - 6164572
20062
ENSAPLT00000044797
6144511 - 6163760
19250