Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_6165471_6165815_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6165471 - 6165815

Intron Length:

345

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGGCCC

5'SS Class:

strong_major

3'SS Sequence:

TCCATGTGCTTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGTTTAC

U12 Branch Point Sequence:

CCCTGTTTACCT

Flanking Amino Acid:

ANILVLNNLRRQRGMNTFLF

Intron Amino Acid Position:

553

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.3

0.78

0.9

66.5

39.1

Major BPS

71.4

0.53

1.1

63.4

Major PPT

62.5

0.28

60.8

40.1

Minor 5ss

26.6

-2.7

3.1

33.5

41.9

Minor BPS

47.5

-0.1

2.1

62.23

48.4

Associated Gene:

Gene:

DENND2C

Ensembl Gene ID:

ENSAPLG00000010131

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000027248

6161064 - 6174220

13157

ENSAPLT00000010048

6160987 - 6174220

13234

ENSAPLT00000037088

6160987 - 6174220

13234