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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_6166568_6166695_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6166568 - 6166695
Intron Length:
128

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTA|GTATGTGCT
5'SS Class:
major
3'SS Sequence:
TCTCTGTCCACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GGTTAAT
U12 Branch Point Sequence:
TAGTGGTTAATC
Flanking Amino Acid:
MKWMIQVPRIYDVFRSQKFL
Intron Amino Acid Position:
456

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.3
0.48
1
67
36.4
Major BPS
66.6
0.41
1.4
69.7
44.2
Major PPT
77.6
0.62
0.8
71.8
32.8
Minor 5ss
43.3
-0.7
3.1
60.3
39.4
Minor BPS
48.3
-0.1
2.4
62.92
43.2

Associated Gene:

Gene:
DENND2C
Ensembl Gene ID:
ENSAPLG00000010131
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027248
6161064 - 6174220
13157
ENSAPLT00000010048
6160987 - 6174220
13234
ENSAPLT00000037088
6160987 - 6174220
13234