About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_6166860_6166956_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6166860 - 6166956
Intron Length:
97

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGAATA
5'SS Class:
strong_major
3'SS Sequence:
TCTTGGTTCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCCCAT
U12 Branch Point Sequence:
TCCCCATGCACT
Flanking Amino Acid:
NGEYFATIIKEVGSDLEDAK
Intron Amino Acid Position:
402

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
80.8
33.7
Major BPS
59.7
0.24
1.3
68.6
38.9
Major PPT
79
0.65
0.9
76.2
37.8
Minor 5ss
35.7
-1.6
3.3
48.3
47.4
Minor BPS
44.7
-0.3
2.1
63.41
46.2

Associated Gene:

Gene:
DENND2C
Ensembl Gene ID:
ENSAPLG00000010131
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027248
6161064 - 6174220
13157
ENSAPLT00000010048
6160987 - 6174220
13234
ENSAPLT00000037088
6160987 - 6174220
13234