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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_6167518_6167768_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6167518 - 6167768
Intron Length:
251

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATGGC
5'SS Class:
strong_major
3'SS Sequence:
TCTGCCTTCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTGAA
U12 Branch Point Sequence:
CCATCCTGAAGC
Flanking Amino Acid:
PHRDFYNCRKVDTHIHAAAC
Intron Amino Acid Position:
293

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
73
36.9
Major BPS
69.6
0.49
1
59.5
39
Major PPT
79.2
0.66
0.8
76.5
32.1
Minor 5ss
32.4
-2
3.3
43.9
43.9
Minor BPS
52.7
0.06
1.8
59.79
45.1

Associated Gene:

Gene:
DENND2C
Ensembl Gene ID:
ENSAPLG00000010131
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027248
6161064 - 6174220
13157
ENSAPLT00000010048
6160987 - 6174220
13234
ENSAPLT00000037088
6160987 - 6174220
13234