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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_6167899_6168410_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6167899 - 6168410
Intron Length:
512

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGT|GTAAGTGCC
5'SS Class:
major
3'SS Sequence:
TCGCTTTTACCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CAGTCAC
U12 Branch Point Sequence:
TTCGCTTTTACC
Flanking Amino Acid:
FLLALIAQGPVKTYAHRRLK
Intron Amino Acid Position:
249

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.5
0.55
1.1
68.5
37.9
Major BPS
54.8
0.12
1.2
58.7
38.1
Major PPT
75.7
0.58
0.9
69.6
40.4
Minor 5ss
35.9
-1.6
3.2
45.9
42.3
Minor BPS
59.4
0.28
1.8
70.02
42

Associated Gene:

Gene:
DENND2C
Ensembl Gene ID:
ENSAPLG00000010131
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027248
6161064 - 6174220
13157
ENSAPLT00000010048
6160987 - 6174220
13234
ENSAPLT00000037088
6160987 - 6174220
13234