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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_6168631_6168860_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6168631 - 6168860
Intron Length:
230

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTTTA
5'SS Class:
strong_major
3'SS Sequence:
CCCCTTGGTCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GGTATAT
U12 Branch Point Sequence:
TGTGGTATATTC
Flanking Amino Acid:
DVWRATDVGPVFTPPVKDGQ
Intron Amino Acid Position:
176

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.1
0.95
0.8
85.8
25.5
Major BPS
48.5
-0
1.4
46.7
46.7
Major PPT
68
0.41
1
59.8
40.5
Minor 5ss
49.9
-0
2.4
66.7
44.7
Minor BPS
40.1
-0.7
2.1
51.17
40.6

Associated Gene:

Gene:
DENND2C
Ensembl Gene ID:
ENSAPLG00000010131
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027248
6161064 - 6174220
13157
ENSAPLT00000010048
6160987 - 6174220
13234
ENSAPLT00000037088
6160987 - 6174220
13234