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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_6169024_6170146_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6169024 - 6170146
Intron Length:
1123

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAGGTACT
5'SS Class:
major
3'SS Sequence:
AGCTCTCTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATTCAA
U12 Branch Point Sequence:
TTGCATTCAACA
Flanking Amino Acid:
VQITGDYASGVTVEDFEVVC
Intron Amino Acid Position:
122

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.5
0.67
1.1
75.3
40.8
Major BPS
70.6
0.51
1
73.3
31.3
Major PPT
76.5
0.6
0.9
69.6
36.1
Minor 5ss
36.5
-1.5
3
43.6
43.6
Minor BPS
52.4
0.07
1.7
66.22
40

Associated Gene:

Gene:
DENND2C
Ensembl Gene ID:
ENSAPLG00000010131
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027248
6161064 - 6174220
13157
ENSAPLT00000010048
6160987 - 6174220
13234
ENSAPLT00000037088
6160987 - 6174220
13234