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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_6170313_6170814_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6170313 - 6170814
Intron Length:
502

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGCGAC
5'SS Class:
major
3'SS Sequence:
TCTTCCCTGGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GAGTCAG
U12 Branch Point Sequence:
TTTGCCTGAGGC
Flanking Amino Acid:
LQESSSAPEKRRKRMLRLKT
Intron Amino Acid Position:
66

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
67.1
38.9
Major BPS
44.2
-0.3
1.7
49.1
46.3
Major PPT
76.8
0.6
0.9
73.3
31.6
Minor 5ss
37.1
-1.5
3.4
50.6
46.1
Minor BPS
48.8
-0.1
2.1
67.11
44.4

Associated Gene:

Gene:
DENND2C
Ensembl Gene ID:
ENSAPLG00000010131
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027248
6161064 - 6174220
13157
ENSAPLT00000010048
6160987 - 6174220
13234
ENSAPLT00000037088
6160987 - 6174220
13234