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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_6170990_6172635_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6170990 - 6172635
Intron Length:
1646

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTGTGAC
U12 Branch Point Sequence:
GCCCGTGTGACC
Flanking Amino Acid:
SRVKIPAEEKEMDEAMRSFA
Intron Amino Acid Position:
12

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.7
1.08
0.6
96
12.4
Major BPS
53.6
0.09
1.4
48.8
46.3
Major PPT
91
0.92
0.6
89
20
Minor 5ss
36.2
-1.6
2.9
50.6
45.9
Minor BPS
38.7
-0.9
2.2
42.9
39

Associated Gene:

Gene:
DENND2C
Ensembl Gene ID:
ENSAPLG00000010131
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037088
6160987 - 6174220
13234
ENSAPLT00000027248
6161064 - 6174220
13157