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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_6170990_6174198_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6170990 - 6174198
Intron Length:
3209

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTCTG
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTGTGAC
U12 Branch Point Sequence:
GCCCGTGTGACC
Flanking Amino Acid:
MSRVKIPEMDEAMRSFA
Intron Amino Acid Position:
8

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.9
0.82
1
72.7
44.5
Major BPS
53.6
0.09
1.4
48.8
46.3
Major PPT
91
0.92
0.6
89
20
Minor 5ss
36.4
-1.5
3.3
49
47.2
Minor BPS
38.7
-0.9
2.2
42.9
39

Associated Gene:

Gene:
DENND2C
Ensembl Gene ID:
ENSAPLG00000010131
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010048
6160987 - 6174220
13234