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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_617697_618350_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
617697 - 618350
Intron Length:
654

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CAG|GCAAAGACA
5'SS Class:
strong_major
3'SS Sequence:
CTATCCTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCGCTAT
U12 Branch Point Sequence:
TTCTCGCTATCC
Flanking Amino Acid:
PKHIQKSGSGFLALYQV
Intron Amino Acid Position:
8

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
1
75.8
33.2
Major BPS
48.4
-0.1
1.5
46.4
46.5
Major PPT
83.4
0.75
0.8
80.8
30.9
Minor 5ss
21.6
-3.3
3.8
31.6
42.4
Minor BPS
46.2
-0.3
2.5
66.82
45

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014675
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015287
611947 - 618372
6426