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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_6182782_6184351_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6182782 - 6184351
Intron Length:
1570

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGTGC
5'SS Class:
strong_major
3'SS Sequence:
GTTTACATTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
AATACTTTACCT
Flanking Amino Acid:
FIETSAKTRQGVEDAFYTLV
Intron Amino Acid Position:
151

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.7
0.91
0.9
73.9
38
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
78.9
0.65
0.9
74.8
39.5
Minor 5ss
37.1
-1.5
3.3
50.2
46.4
Minor BPS
61.7
0.44
1.6
76.33
40.1

Associated Gene:

Gene:
NRAS
Ensembl Gene ID:
ENSAPLG00000009467
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009864
6182658 - 6186130
3473