About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_6185147_6186019_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6185147 - 6186019
Intron Length:
873

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGCCG
5'SS Class:
strong_major
3'SS Sequence:
GTGTTTTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
GTTTTTATAATC
Flanking Amino Acid:
FVDEYDPTIEDSYRKQVVID
Intron Amino Acid Position:
38

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
0.9
63.1
43
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
82.5
0.73
0.9
77.3
37
Minor 5ss
25.6
-2.8
3
30.2
43
Minor BPS
61.1
0.33
1.5
71.34
33.8

Associated Gene:

Gene:
NRAS
Ensembl Gene ID:
ENSAPLG00000009467
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009864
6182658 - 6186130
3473