About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_6186366_6186843_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6186366 - 6186843
Intron Length:
478

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTAAAAA
U12 Branch Point Sequence:
TGGACCTTAAAA
Flanking Amino Acid:
RQPRGPDNSKGFGAERKIRQ
Intron Amino Acid Position:
751

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.3
1.09
0.7
86.7
22.1
Major BPS
61.4
0.28
1.1
67.9
34.4
Major PPT
96.3
1.04
0.5
92.6
17.2
Minor 5ss
32
-2.1
3.1
39.9
46.1
Minor BPS
66.6
0.52
1.5
70.67
40.8

Associated Gene:

Gene:
CSDE1
Ensembl Gene ID:
ENSAPLG00000008797
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032863
6186318 - 6202203
15886
ENSAPLT00000009248
6186318 - 6202203
15886
ENSAPLT00000039543
6186318 - 6202203
15886
ENSAPLT00000034595
6186318 - 6202203
15886