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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_6186977_6187925_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6186977 - 6187925
Intron Length:
949

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGGATT
5'SS Class:
strong_major
3'SS Sequence:
GACTTTGTTACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTCAT
U12 Branch Point Sequence:
ATGTGGTTGACT
Flanking Amino Acid:
KCSACNVWRVCEGAKAVAAP
Intron Amino Acid Position:
706

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
0.9
80.3
33.8
Major BPS
83.4
0.83
0.8
83.7
25.7
Major PPT
75.1
0.57
1
68.1
42.1
Minor 5ss
32.9
-2
3.4
45.4
43.9
Minor BPS
48.5
-0
2.5
72.94
44.4

Associated Gene:

Gene:
CSDE1
Ensembl Gene ID:
ENSAPLG00000008797
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039543
6186318 - 6202203
15886
ENSAPLT00000034595
6186318 - 6202203
15886
ENSAPLT00000032863
6186318 - 6202203
15886
ENSAPLT00000009248
6186318 - 6202203
15886