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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_6188090_6189153_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6188090 - 6189153
Intron Length:
1064

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
TGTTGGTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACATGAT
U12 Branch Point Sequence:
AAAGACATAACC
Flanking Amino Acid:
RATVECVKDQFGFINYEVGD
Intron Amino Acid Position:
652

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92
0.99
0.7
82.8
23.2
Major BPS
63.3
0.33
1.1
53.7
41.6
Major PPT
80.6
0.69
0.9
76.9
42.1
Minor 5ss
26.6
-2.7
3
30.8
43.1
Minor BPS
47.6
-0.2
1.9
57.43
40.2

Associated Gene:

Gene:
CSDE1
Ensembl Gene ID:
ENSAPLG00000008797
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032863
6186318 - 6202203
15886
ENSAPLT00000009248
6186318 - 6202203
15886
ENSAPLT00000039543
6186318 - 6202203
15886
ENSAPLT00000034595
6186318 - 6202203
15886