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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_6189333_6189609_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6189333 - 6189609
Intron Length:
277

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGACTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTCTCAAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTAAT
U12 Branch Point Sequence:
AGACTCTTAATT
Flanking Amino Acid:
YQGMIEVMEDGEMKGEFYPF
Intron Amino Acid Position:
592

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.4
0.81
0.9
77.2
37.6
Major BPS
87
0.92
0.9
86.2
29.1
Major PPT
80.5
0.69
1
79.8
32.6
Minor 5ss
38
-1.3
3.3
54.4
43.7
Minor BPS
66.4
0.59
1.2
73.48
37

Associated Gene:

Gene:
CSDE1
Ensembl Gene ID:
ENSAPLG00000008797
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032863
6186318 - 6202203
15886
ENSAPLT00000009248
6186318 - 6202203
15886
ENSAPLT00000039543
6186318 - 6202203
15886
ENSAPLT00000034595
6186318 - 6202203
15886