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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_6190358_6190695_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6190358 - 6190695
Intron Length:
338

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAATGAC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTCCTGTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATAAT
U12 Branch Point Sequence:
TTGCATATAATT
Flanking Amino Acid:
NHDKEIFFHYSEYCGDIDSL
Intron Amino Acid Position:
514

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
0.9
74.3
29.2
Major BPS
79
0.72
1
78.4
31.2
Major PPT
89.2
0.88
0.6
86
21
Minor 5ss
26.9
-2.7
3.1
33.8
42.3
Minor BPS
49.8
0.07
1.8
71.29
39.8

Associated Gene:

Gene:
CSDE1
Ensembl Gene ID:
ENSAPLG00000008797
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039543
6186318 - 6202203
15886
ENSAPLT00000034595
6186318 - 6202203
15886
ENSAPLT00000032863
6186318 - 6202203
15886
ENSAPLT00000009248
6186318 - 6202203
15886