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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_6190872_6191733_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6190872 - 6191733
Intron Length:
862

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AAG|GCAATATAA
5'SS Class:
major
3'SS Sequence:
ACCTCTTAAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTGAT
U12 Branch Point Sequence:
TACCTCTTAAAC
Flanking Amino Acid:
GSANPQIGDKVEFSVCEVKR
Intron Amino Acid Position:
456

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.6
0.68
1.2
66.7
35
Major BPS
88.6
0.96
0.8
77.7
37.1
Major PPT
66.4
0.37
1
62.1
37.2
Minor 5ss
27
-2.6
3.9
38.4
46.6
Minor BPS
62.2
0.36
1.4
66.11
39

Associated Gene:

Gene:
CSDE1
Ensembl Gene ID:
ENSAPLG00000008797
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034595
6186318 - 6202203
15886
ENSAPLT00000032863
6186318 - 6202203
15886
ENSAPLT00000009248
6186318 - 6202203
15886
ENSAPLT00000039543
6186318 - 6202203
15886