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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_6191842_6192444_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6191842 - 6192444
Intron Length:
603

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGTATGC
5'SS Class:
major
3'SS Sequence:
GTCTTGTCTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTGAT
U12 Branch Point Sequence:
AATTGCTGAATC
Flanking Amino Acid:
ATSPNKGKEKEAEDGIIVYD
Intron Amino Acid Position:
420

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.9
0.47
1.1
59.7
40.5
Major BPS
83.8
0.84
1
73.6
41.8
Major PPT
75.9
0.58
0.9
73.5
37.1
Minor 5ss
37
-1.5
3.3
50.9
45.6
Minor BPS
55.6
0.16
1.9
67.06
38.4

Associated Gene:

Gene:
CSDE1
Ensembl Gene ID:
ENSAPLG00000008797
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034595
6186318 - 6202203
15886
ENSAPLT00000032863
6186318 - 6202203
15886
ENSAPLT00000009248
6186318 - 6202203
15886