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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_6193994_6195016_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6193994 - 6195016
Intron Length:
1023

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGCATTTC
5'SS Class:
major
3'SS Sequence:
TTCTGTTCACTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTAAA
U12 Branch Point Sequence:
TTTCTGTTCACT
Flanking Amino Acid:
VIPKVPSKNQNDPLPGRIKV
Intron Amino Acid Position:
249

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.3
0.57
1
71.8
34.4
Major BPS
68.7
0.47
0.9
67.9
25
Major PPT
72.5
0.51
0.9
67
39.3
Minor 5ss
37.6
-1.4
3.2
52.1
45.1
Minor BPS
50.6
0.1
2.4
80.65
41.4

Associated Gene:

Gene:
CSDE1
Ensembl Gene ID:
ENSAPLG00000008797
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034595
6186318 - 6202203
15886
ENSAPLT00000032863
6186318 - 6202203
15886
ENSAPLT00000009248
6186318 - 6202203
15886
ENSAPLT00000039543
6186318 - 6202203
15886