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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_6195143_6195792_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6195143 - 6195792
Intron Length:
650

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTGAT
5'SS Class:
strong_major
3'SS Sequence:
TTTGTACTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAA
U12 Branch Point Sequence:
GGATATTTAACT
Flanking Amino Acid:
RCQGVVCAMKGKEVATDVRL
Intron Amino Acid Position:
195

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.87
0.9
84.2
26.3
Major BPS
79.5
0.73
0.9
70
36.9
Major PPT
81
0.7
0.8
78.7
34.8
Minor 5ss
36.1
-1.6
3.3
49.4
41.3
Minor BPS
65.2
0.56
1.5
75.81
40.1

Associated Gene:

Gene:
CSDE1
Ensembl Gene ID:
ENSAPLG00000008797
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034595
6186318 - 6202203
15886