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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_6195444_6195792_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6195444 - 6195792
Intron Length:
349

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTGAT
5'SS Class:
strong_major
3'SS Sequence:
GTTCTGTTCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
ATTTATTAAACA
Flanking Amino Acid:
RCQGVVCAMKEAFGFIERGD
Intron Amino Acid Position:
164

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.87
0.9
84.2
26.3
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
75
0.56
0.9
73
37.3
Minor 5ss
36.1
-1.6
3.3
49.4
41.3
Minor BPS
60.4
0.32
1.8
74.53
37

Associated Gene:

Gene:
CSDE1
Ensembl Gene ID:
ENSAPLG00000008797
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039543
6186318 - 6202203
15886
ENSAPLT00000032863
6186318 - 6202203
15886
ENSAPLT00000009248
6186318 - 6202203
15886