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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_6197232_6197876_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6197232 - 6197876
Intron Length:
645

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATTAGG
5'SS Class:
strong_major
3'SS Sequence:
GATTGTTTTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATAAT
U12 Branch Point Sequence:
AATGCCATTACT
Flanking Amino Acid:
NGNLQELKVGDDVEFEVSSD
Intron Amino Acid Position:
67

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.5
0.81
1
74.6
41.7
Major BPS
79
0.72
1
78.4
31.2
Major PPT
75.7
0.58
0.9
69.8
41.2
Minor 5ss
35.2
-1.7
2.7
43
43.8
Minor BPS
50.4
0.09
2
72.63
43.8

Associated Gene:

Gene:
CSDE1
Ensembl Gene ID:
ENSAPLG00000008797
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032863
6186318 - 6202203
15886
ENSAPLT00000009248
6186318 - 6202203
15886
ENSAPLT00000039543
6186318 - 6202203
15886
ENSAPLT00000034595
6186318 - 6202203
15886